PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01029219001
Common NameLOC100259877, VIT_11s0052g00840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 465aa    MW: 50445.6 Da    PI: 9.2483
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01029219001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.6e-15103162155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  GSVIVT01029219001 103 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 162
                        57*******************666664477446*************************98 PP

2AP247.44.7e-15205256155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSVIVT01029219001 205 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 256
                        57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-17103172IPR016177DNA-binding domain
PfamPF008472.5E-12103162IPR001471AP2/ERF domain
CDDcd000182.16E-22103172No hitNo description
PROSITE profilePS5103219.23104170IPR001471AP2/ERF domain
SMARTSM003804.6E-30104176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-16104171IPR001471AP2/ERF domain
PRINTSPR003671.8E-6105116IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-18205266IPR016177DNA-binding domain
CDDcd000181.02E-24205266No hitNo description
PfamPF008475.8E-10205256IPR001471AP2/ERF domain
SMARTSM003801.5E-33206270IPR001471AP2/ERF domain
PROSITE profilePS5103219.045206264IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18206265IPR001471AP2/ERF domain
PRINTSPR003671.8E-6246266IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MASNHNWLAF SLSNNSLPSD SSQLCLFEAL SASTHHNGGV DREQGFPDRG GSDLIGGPKL  60
EDFLAASFLR GFSSEQSEAQ KQLALTPEPS PKKSVDTFGQ RTSIYRGVTR HRWTGRYEAH  120
LWDNSCRREG QSRKGRQVYL GGYDKEEKAA RAYDLAALKY WGPTTTTNFP VSNYEKELEN  180
MKNMTRQEFV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ  240
EEAAEAYDIA AIKFRGLNAV TNFDMSRYDV KSIANSNLPI GGAITTGKPK TSPSDSASDS  300
GSRRSEEQVQ VLSGPSNTLI FSKPLKQDHH QSVDYWSVLG YQASTLNSVV KNPILESSFP  360
FQTSSNLTMD FSTASAGFLC NGGGYIQQQQ SNSSSSTASS SNSIPYATPV NGLNSSTSYE  420
VSGYNSWAAA TAAAAAAAAA PSLHSFQAAK PSLSVFQTPI FGME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.158700.0fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4367260.0AM436726.2 Vitis vinifera contig VV78X141375.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268683.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-147AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLF6GXH10.0F6GXH1_VITVI; Putative uncharacterized protein
STRINGVIT_11s0052g00840.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-134AINTEGUMENTA-like 5